If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ), 'gf_id' => 'HOM05D000983', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000983' ), 'data_identifier' => 'HOM05D000983', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000983', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23010' => 'bna', 'A07p36260' => 'bna', 'A07p41700' => 'bna', 'Aa31LG4G6250' => 'aar', 'Aa31LG6G4350' => 'aar', 'Aa31LG7G10710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.70' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1638' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.408' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1200' => 'aag', 'Actinidia04020' => 'ach', 'Actinidia15472' => 'ach', 'Actinidia17027' => 'ach', 'Actinidia23274' => 'ach', 'Actinidia31182' => 'ach', 'Ah.01g008020' => 'amhyb', 'Ah.01g023370' => 'amhyb', 'Ah.01g023410' => 'amhyb', 'Ah.01g023420' => 'amhyb', 'Ah.01g023430' => 'amhyb', 'Ah.02g131280' => 'amhyb', 'Ah.11g040570' => 'amhyb', 'AL2G29120' => 'aly', 'AL2G36170' => 'aly', 'AL7G28170' => 'aly', 'Aqoxy3G03277' => 'aox', 'Aqoxy6G01321' => 'aox', 'Aqoxy6G01322' => 'aox', 'Aqoxy6G01875' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14L56M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SN1MA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3H63LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5SXX56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2NH4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS95PS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GXCU2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1H9M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ7EAY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T04E6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X74CZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZINR5T' => 'arhy', 'AT1G69830' => 'ath', 'AT1G76130' => 'ath', 'AT4G25000' => 'ath', 'ATR0064G030' => 'atr', 'ATR0564G394' => 'atr', 'ATR0661G021' => 'atr', 'ATR1120G063' => 'atr', 'Atru.chr11.1844' => 'acertr', 'Atru.chr13.188' => 'acertr', 'AUR62005729' => 'cqu', 'AUR62009990' => 'cqu', 'AUR62009991' => 'cqu', 'AUR62009998' => 'cqu', 'AUR62012573' => 'cqu', 'AUR62012978' => 'cqu', 'AUR62012979' => 'cqu', 'AUR62012986' => 'cqu', 'AUR62013843' => 'cqu', 'AUR62013844' => 'cqu', 'AUR62014627' => 'cqu', 'AUR62028831' => 'cqu', 'AUR62036756' => 'cqu', 'AUR62036762' => 'cqu', 'BcaB03g14761' => 'bca', 'BcaC08g46429' => 'bca', 'BcaC08g47107' => 'bca', 'BcaC08g47288' => 'bca', 'BcaC09g50137' => 'bca', 'BcaNung00348' => 'bca', 'BcaNung03988' => 'bca', 'BcaNung05114' => 'bca', 'BcaNung05115' => 'bca', 'BolC1t01959H' => 'bol', 'BolC1t02788H' => 'bol', 'BolC2t08760H' => 'bol', 'BolC6t39434H' => 'bol', 'BolC6t40047H' => 'bol', 'BraA01t02213Z' => 'bra', 'BraA07t31198Z' => 'bra', 'BraA07t31699Z' => 'bra', 'C01p20290' => 'bna', 'C01p28610' => 'bna', 'C02p26970' => 'bna', 'C06p43620' => 'bna', 'C06p50080' => 'bna', 'CAN.G236.10' => 'can', 'CAN.G279.13' => 'can', 'CAN.G311.88' => 'can', 'CAN.G371.4' => 'can', 'CAN.G371.5' => 'can', 'CAN.G371.8' => 'can', 'CAN.G398.16' => 'can', 'CAN.G971.9' => 'can', 'CANSAT25G3388' => 'cansat', 'CANSAT54G0068' => 'cansat', 'CANSAT64G0240' => 'cansat', 'CANSAT64G1729' => 'cansat', 'CARHR062910' => 'chi', 'CARHR069670' => 'chi', 'CARHR232390' => 'chi', 'Carub.0002s1652' => 'cru', 'Carub.0002s2301' => 'cru', 'Carub.0007s1603' => 'cru', 'Ca_04342_v3' => 'car', 'Ca_04744_v3' => 'car', 'Ca_13266_v3' => 'car', 'Ca_13292_v3' => 'car', 'Ca_13293_v3' => 'car', 'Ca_13488_v3' => 'car', 'Ca_22859_v3' => 'car', 'Ca_30588_v3' => 'car', 'CBR_g17035' => 'cbr', 'CBR_g45721' => 'cbr', 'Cc06_g08480' => 'ccan', 'Cc07_g04160' => 'ccan', 'Cc10_g04170' => 'ccan', 'Cc11_g13430' => 'ccan', 'CDE02G3461' => 'cde', 'CDE04G0949' => 'cde', 'CDE06G0131' => 'cde', 'CDE06G1604' => 'cde', 'CDE06G2429' => 'cde', 'CDE06G2643' => 'cde', 'CDE06G2653' => 'cde', 'CDE07G0280' => 'cde', 'CDE07G0740' => 'cde', 'CDE10G0096' => 'cde', 'CDE10G0125' => 'cde', 'CDE10G1198' => 'cde', 'Cfa004522' => 'cfa', 'Cfa004523' => 'cfa', 'Cfa005109' => 'cfa', 'Cfa009027' => 'cfa', 'Cfa009028' => 'cfa', 'Cfa009029' => 'cfa', 'Cfa018551' => 'cfa', 'Cfa018553' => 'cfa', 'Cfa018554' => 'cfa', 'Cfa026447' => 'cfa', 'Ciclev10001266m.g' => 'ccl', 'Ciclev10001348m.g' => 'ccl', 'Ciclev10018086m.g' => 'ccl', 'Ciclev10030661m.g' => 'ccl', 'CiPaw.02G070200' => 'cil', 'CiPaw.02G070300' => 'cil', 'CiPaw.05G139400' => 'cil', 'CiPaw.06G081000' => 'cil', 'CiPaw.07G142000' => 'cil', 'CiPaw.08G070100' => 'cil', 'CiPaw.15G056400' => 'cil', 'ClCG05G019870' => 'cla', 'ClCG05G024550' => 'cla', 'ClCG07G007430' => 'cla', 'COL.COLO4_00006' => 'col', 'COL.COLO4_07022' => 'col', 'COL.COLO4_07928' => 'col', 'COL.COLO4_26062' => 'col', 'COL.COLO4_26507' => 'col', 'COL.COLO4_26508' => 'col', 'Cpa.g.sc14.168' => 'cpa', 'Cpa.g.sc26.242' => 'cpa', 'Cpa.g.sc49.17' => 'cpa', 'Cpa.g.sc49.22' => 'cpa', 'Cpa.g.sc5.271' => 'cpa', 'Cre08.g362450' => 'cre', 'Cre08.g384750' => 'cre', 'Cre08.g385500' => 'cre', 'CsaV3_4G009250' => 'csa', 'CsaV3_4G037030' => 'csa', 'CsaV3_5G032400' => 'csa', 'CSS0008836' => 'camsi', 'CSS0009471' => 'camsi', 'CSS0010556' => 'camsi', 'CSS0011859' => 'camsi', 'CSS0016919' => 'camsi', 'CSS0020564' => 'camsi', 'CSS0024528' => 'camsi', 'CSS0024586' => 'camsi', 'CSS0029050' => 'camsi', 'CSS0035472' => 'camsi', 'CSS0042638' => 'camsi', 'CSS0046095' => 'camsi', 'CSS0047792' => 'camsi', 'DCAR_016745' => 'dca', 'DCAR_023865' => 'dca', 'DCAR_024593' => 'dca', 'DCAR_025428' => 'dca', 'DCAR_027388' => 'dca', 'Dinv24958' => 'din', 'Dinv31909' => 'din', 'Dinv34946' => 'din', 'Dinv35962' => 'din', 'Duzib093G1969' => 'dzi', 'Duzib093G1978' => 'dzi', 'Duzib093G2100' => 'dzi', 'Duzib147G1261' => 'dzi', 'Duzib248G1546' => 'dzi', 'Duzib251G0295' => 'dzi', 'Duzib268G0604' => 'dzi', 'ECA233G4007' => 'eca', 'ECA238G2889' => 'eca', 'ECA246G0250' => 'eca', 'ECA246G2169' => 'eca', 'EL10Ac1g02044' => 'bvu', 'EL10Ac3g06432' => 'bvu', 'EL10Ac6g13156' => 'bvu', 'EL10Ac9g21309' => 'bvu', 'EL10Ac9g21310' => 'bvu', 'EL10Ac9g21311' => 'bvu', 'EL10Ac9g21313' => 'bvu', 'EL10Ac9g21322' => 'bvu', 'EL10Ac9g22489' => 'bvu', 'Eucgr.F02347' => 'egr', 'Eucgr.F02349' => 'egr', 'Eucgr.F03529' => 'egr', 'Eucgr.G02543' => 'egr', 'FAN07G2190' => 'fan', 'FAN09G0106' => 'fan', 'FAN12G0310' => 'fan', 'FAN15G0491' => 'fan', 'FAN15G1346' => 'fan', 'FAN17G2095' => 'fan', 'FAN20G2256' => 'fan', 'FAN22G1876' => 'fan', 'FAN24G2118' => 'fan', 'FAN27G0824' => 'fan', 'FAN27G3389' => 'fan', 'FvH4_2g06030' => 'fve', 'FvH4_2g37840' => 'fve', 'FvH4_4g31910' => 'fve', 'FvH4_6g46930' => 'fve', 'Glyma.02G020500' => 'gma', 'Glyma.08G244900' => 'gma', 'Glyma.08G296800' => 'gma', 'Glyma.10G087400' => 'gma', 'Glyma.11G153301' => 'gma', 'Glyma.14G222600' => 'gma', 'Glyma.15G016000' => 'gma', 'Glyma.17G242400' => 'gma', 'Glyma.18G125300' => 'gma', 'Gohir.A01G119700' => 'ghi', 'Gohir.A01G119725' => 'ghi', 'Gohir.A03G098400' => 'ghi', 'Gohir.A03G099066' => 'ghi', 'Gohir.A05G202200' => 'ghi', 'Gohir.A05G255400' => 'ghi', 'Gohir.A06G000800' => 'ghi', 'Gohir.A11G072900' => 'ghi', 'Gohir.A12G166500' => 'ghi', 'Gohir.D01G108100' => 'ghi', 'Gohir.D02G114700' => 'ghi', 'Gohir.D05G205300' => 'ghi', 'Gohir.D05G256900' => 'ghi', 'Gohir.D11G077200' => 'ghi', 'Gohir.D12G170000' => 'ghi', 'Gorai.002G132300' => 'gra', 'Gorai.005G139200' => 'gra', 'Gorai.007G082900' => 'gra', 'Gorai.008G182600' => 'gra', 'Gorai.009G211600' => 'gra', 'Gorai.009G268400' => 'gra', 'Gorai.010G001000' => 'gra', 'GSVIVG01008714001' => 'vvi', 'GSVIVG01020069001' => 'vvi', 'GSVIVG01031740001' => 'vvi', 'GSVIVG01031741001' => 'vvi', 'GSVIVG01031742001' => 'vvi', 'GSVIVG01031743001' => 'vvi', 'GSVIVG01031746001' => 'vvi', 'GSVIVG01032922001' => 'vvi', 'HanXRQChr05g0150881' => 'han', 'HanXRQChr05g0150891' => 'han', 'HanXRQChr07g0191921' => 'han', 'HanXRQChr07g0199561' => 'han', 'HanXRQChr08g0215691' => 'han', 'HanXRQChr10g0302081' => 'han', 'HanXRQChr14g0449961' => 'han', 'Haze_10080' => 'cav', 'Haze_12057' => 'cav', 'Haze_17531' => 'cav', 'Haze_22732' => 'cav', 'Hma1.2p1_0718F.1_g208320' => 'hma', 'Hma1.2p1_1260F.1_g270970' => 'hma', 'HPP92_007664' => 'vpl', 'HPP92_007665' => 'vpl', 'HPP92_014998' => 'vpl', 'HPP92_016384' => 'vpl', 'Hund05141' => 'sun', 'Hund05909' => 'sun', 'Hund15801' => 'sun', 'Hund25267' => 'sun', 'Lalb_Chr05g0230231' => 'lal', 'Lalb_Chr05g0230241' => 'lal', 'Lalb_Chr10g0097991' => 'lal', 'Lalb_Chr14g0368681' => 'lal', 'Lalb_Chr14g0368691' => 'lal', 'Lalb_Chr14g0368701' => 'lal', 'Lalb_Chr19g0131631' => 'lal', 'Lj1g0023223' => 'lja', 'Lj2g0003595' => 'lja', 'Lj3A1042T89' => 'lonja', 'Lj4A16G126' => 'lonja', 'Lj4A55T45' => 'lonja', 'Lj4A55T46' => 'lonja', 'Lj4A58G20' => 'lonja', 'Lj4A802G107' => 'lonja', 'Lj4g0022586' => 'lja', 'Lj5g0018308' => 'lja', 'Lj5g0018957' => 'lja', 'Lj5g0026674' => 'lja', 'Lj6A74T33' => 'lonja', 'Lj6A793T95' => 'lonja', 'Lj6C74T13' => 'lonja', 'Lj6C8T1' => 'lonja', 'Lj8A319T58' => 'lonja', 'Lj8A319T59' => 'lonja', 'Lj8A319T60' => 'lonja', 'Lj8A320G45' => 'lonja', 'Lj8A320T42' => 'lonja', 'Lj8A320T43' => 'lonja', 'Lj8A321G36' => 'lonja', 'Lj8A321T34' => 'lonja', 'Lj8A321T35' => 'lonja', 'Lsat_1_v5_gn_2_24540' => 'lsa', 'Lsat_1_v5_gn_2_24680' => 'lsa', 'Lsat_1_v5_gn_2_87580' => 'lsa', 'Lsat_1_v5_gn_3_51421' => 'lsa', 'Lsat_1_v5_gn_4_51500' => 'lsa', 'Lsat_1_v5_gn_6_112060' => 'lsa', 'Lsat_1_v5_gn_8_29040' => 'lsa', 'Lsat_1_v5_gn_8_35521' => 'lsa', 'Lsat_1_v5_gn_8_54140' => 'lsa', 'Manes.01G189800' => 'mes', 'Manes.02G054500' => 'mes', 'Manes.05G097100' => 'mes', 'Manes.05G141400' => 'mes', 'Manes.10G056400' => 'mes', 'Manes.12G130900' => 'mes', 'Manes.18G037000' => 'mes', 'Manes.18G037200' => 'mes', 'Mapoly0020s0005' => 'mpo', 'Mapoly0024s0059' => 'mpo', 'Mapoly0033s0036' => 'mpo', 'Mapoly0040s0003' => 'mpo', 'Mapoly0061s0041' => 'mpo', 'Mapoly0285s0001' => 'mpo', 'MBI05_g12851_MAGBIO' => 'mbi', 'MCO10G386' => 'mco', 'MCO11G075' => 'mco', 'MCO11G913' => 'mco', 'MCO13G310' => 'mco', 'MCO16G012' => 'mco', 'MD00G1035200' => 'mdo', 'MD00G1035300' => 'mdo', 'MD00G1215700' => 'mdo', 'MD00G1215800' => 'mdo', 'MD05G1081100' => 'mdo', 'MD05G1081200' => 'mdo', 'MD08G1006000' => 'mdo', 'MD08G1101700' => 'mdo', 'MD09G1066000' => 'mdo', 'MD13G1078600' => 'mdo', 'MD15G1005200' => 'mdo', 'MD15G1083100' => 'mdo', 'MD16G1078200' => 'mdo', 'MD17G1058700' => 'mdo', 'Medtr1g019440' => 'mtr', 'Medtr1g019460' => 'mtr', 'Medtr1g019480' => 'mtr', 'Medtr1g026170' => 'mtr', 'Medtr2g042050' => 'mtr', 'Medtr3g062030' => 'mtr', 'Medtr4g062240' => 'mtr', 'Medtr6g027900' => 'mtr', 'Medtr7g013300' => 'mtr', 'Medtr8g032250' => 'mtr', 'Medtr8g468990' => 'mtr', 'MELO3C012071.2' => 'cme', 'MELO3C017002.2' => 'cme', 'MELO3C019036.2' => 'cme', 'Migut.C00580' => 'egut', 'Migut.E00112' => 'egut', 'Migut.H00630' => 'egut', 'Migut.J01641' => 'egut', 'MSTRG.1136' => 'ama', 'MSTRG.1347' => 'ama', 'MSTRG.25284' => 'ama', 'MSTRG.674' => 'ama', 'MSTRG.7822' => 'ama', 'Nitab4.5_0000212g0220' => 'nta', 'Nitab4.5_0000287g0310' => 'nta', 'Nitab4.5_0000287g0330' => 'nta', 'Nitab4.5_0000879g0090' => 'nta', 'Nitab4.5_0003280g0040' => 'nta', 'Nitab4.5_0003427g0010' => 'nta', 'Nitab4.5_0005916g0040' => 'nta', 'Nitab4.5_0010498g0010' => 'nta', 'Nn3g17137' => 'nnu', 'Nn3g17429' => 'nnu', 'Nn4g23056' => 'nnu', 'Nn5g30319' => 'nnu', 'Nn5g30882' => 'nnu', 'Oeu017170.1' => 'oeu', 'Oeu027610.1' => 'oeu', 'Oeu040122.2' => 'oeu', 'Oeu043561.1' => 'oeu', 'Oeu060941.1' => 'oeu', 'Os01g0357400' => 'osa', 'Os01g0715400' => 'osa', 'Os02g0765400' => 'osa', 'Os02g0765600' => 'osa', 'Os04g0403300' => 'osa', 'Os06g0713800' => 'osa', 'Os08g0473600' => 'osa', 'Os08g0473900' => 'osa', 'Os09g0457400' => 'osa', 'Os09g0457600' => 'osa', 'Os09g0457800' => 'osa', 'Peaxi162Scf00016g00345' => 'pax', 'Peaxi162Scf00174g00137' => 'pax', 'Peaxi162Scf00209g00331' => 'pax', 'Peaxi162Scf00252g00081' => 'pax', 'Peaxi162Scf00252g00712' => 'pax', 'Peaxi162Scf00252g00816' => 'pax', 'Peaxi162Scf00252g00823' => 'pax', 'Peaxi162Scf00991g00317' => 'pax', 'PGR031G0893' => 'pgr', 'PGR031G3452' => 'pgr', 'PGR119G1594' => 'pgr', 'PGR142G4423' => 'pgr', 'PGSC0003DMG400007974' => 'stu', 'PGSC0003DMG400009891' => 'stu', 'PGSC0003DMG400020603' => 'stu', 'PGSC0003DMG401017626' => 'stu', 'Phvul.001G001900' => 'pvu', 'Phvul.002G065700' => 'pvu', 'Phvul.003G069200' => 'pvu', 'Phvul.008G033800' => 'pvu', 'Phvul.010G017600' => 'pvu', 'Potri.002G014300' => 'ptr', 'Potri.002G126300' => 'ptr', 'Potri.010G092900' => 'ptr', 'Potri.014G029400' => 'ptr', 'Potri.017G093200' => 'ptr', 'Pp3c11_6560' => 'ppa', 'Pp3c13_20160' => 'ppa', 'Pp3c17_1120' => 'ppa', 'Pp3c21_19790' => 'ppa', 'Pp3c22_22380' => 'ppa', 'Pp3c2_3670' => 'ppa', 'Pp3c4_15970' => 'ppa', 'PRCOL_00005137' => 'pco', 'PRCOL_00006963' => 'pco', 'Prupe.1G268300' => 'ppe', 'Prupe.1G357800' => 'ppe', 'Prupe.1G435600' => 'ppe', 'Prupe.3G255500' => 'ppe', 'Prupe.8G125200' => 'ppe', 'Prupe.8G125300' => 'ppe', 'Prupe.8G125500' => 'ppe', 'Psat0s3776g0040' => 'psa', 'Psat1g147640' => 'psa', 'Psat3g201200' => 'psa', 'Psat4g132240' => 'psa', 'Psat6g001000' => 'psa', 'Psat6g013080' => 'psa', 'PSO017G0411' => 'pso', 'PSO478G1338' => 'pso', 'PSO541G2645' => 'pso', 'PSO541G3194' => 'pso', 'PSO541G6376' => 'pso', 'PSO591G0257' => 'pso', 'PSO675G0993' => 'pso', 'PSO675G1408' => 'pso', 'PSO675G6293' => 'pso', 'PSO832G2404' => 'pso', 'QL02p004834' => 'qlo', 'QL02p004843' => 'qlo', 'QL02p004849' => 'qlo', 'QL02p013395' => 'qlo', 'QL03p065556' => 'qlo', 'QL11p035907' => 'qlo', 'QL11p035920' => 'qlo', 'RcHm_v2.0_Chr1g0316721' => 'rch', 'RcHm_v2.0_Chr1g0327581' => 'rch', 'RcHm_v2.0_Chr1g0359701' => 'rch', 'RcHm_v2.0_Chr2g0111851' => 'rch', 'RcHm_v2.0_Chr2g0130321' => 'rch', 'RcHm_v2.0_Chr2g0165911' => 'rch', 'RcHm_v2.0_Chr3g0496411' => 'rch', 'RcHm_v2.0_Chr3g0496421' => 'rch', 'RcHm_v2.0_Chr4g0412641' => 'rch', 'RcHm_v2.0_Chr4g0440561' => 'rch', 'RcHm_v2.0_Chr5g0052021' => 'rch', 'RcHm_v2.0_Chr5g0055831' => 'rch', 'RcHm_v2.0_Chr6g0257211' => 'rch', 'RcHm_v2.0_Chr6g0257251' => 'rch', 'RcHm_v2.0_Chr6g0257281' => 'rch', 'RcHm_v2.0_Chr6g0257311' => 'rch', 'RcHm_v2.0_Chr6g0257321' => 'rch', 'RcHm_v2.0_Chr6g0270761' => 'rch', 'RcHm_v2.0_Chr6g0303841' => 'rch', 'RcHm_v2.0_Chr7g0227001' => 'rch', 'RcHm_v2.0_Chr7g0227031' => 'rch', 'Rhsim06G0009900' => 'rsi', 'Rhsim06G0049800' => 'rsi', 'Rhsim08G0234000' => 'rsi', 'Rhsim08G0234100' => 'rsi', 'Rhsim12G0130100' => 'rsi', 'Sabra02G0011400' => 'sbr', 'Sabra02G0099000' => 'sbr', 'Sabra10G0065700' => 'sbr', 'Sabra14G0020200' => 'sbr', 'Sabra17G0082200' => 'sbr', 'SalBow1G7705' => 'sbo', 'SalBow2G3062' => 'sbo', 'SalBow7G1781' => 'sbo', 'SalBow7G3884' => 'sbo', 'SalBow8G1360' => 'sbo', 'Sc04g0008440' => 'sci', 'Sc26g0004060' => 'sci', 'Sc26g0004540' => 'sci', 'Sed0002131' => 'sed', 'Sed0014431' => 'sed', 'Sed0022980' => 'sed', 'SEGI_02820' => 'sgi', 'SEGI_04432' => 'sgi', 'SEGI_05087' => 'sgi', 'SEGI_07082' => 'sgi', 'SEGI_12982' => 'sgi', 'SEGI_20881' => 'sgi', 'SEGI_22919' => 'sgi', 'SEGI_23618' => 'sgi', 'SEGI_23887' => 'sgi', 'SEGI_26523' => 'sgi', 'SEGI_26532' => 'sgi', 'SEGI_34562' => 'sgi', 'SEGI_37066' => 'sgi', 'SEGI_40823' => 'sgi', 'SEGI_41014' => 'sgi', 'SGA_v2.0_scaffold275G46549' => 'sas', 'SGA_v2.0_scaffold302G47859' => 'sas', 'SMO134G0020' => 'smo', 'SMO197G0007' => 'smo', 'SMO329G0062' => 'smo', 'SMO361G0115' => 'smo', 'SMO361G0191' => 'smo', 'Solyc02g066950.4' => 'sly', 'Solyc03g095710.4' => 'sly', 'Solyc04g078930.4' => 'sly', 'Solyc04g082090.3' => 'sly', 'Solyc05g007070.2' => 'sly', 'Sopen02g016140' => 'spe', 'Sopen03g025640' => 'spe', 'Sopen04g032530' => 'spe', 'Sopen04g035730' => 'spe', 'Sopen05g003040' => 'spe', 'Sp5g24940' => 'spa', 'Sp5g31260' => 'spa', 'Sp7g23000' => 'spa', 'TAR371G0359' => 'tar', 'TAR371G0512' => 'tar', 'TAR625G0028' => 'tar', 'TAR628G0300' => 'tar', 'TAR628G1401' => 'tar', 'TAR629G2838' => 'tar', 'THA.LOC104813768' => 'tha', 'THA.LOC104822100' => 'tha', 'Thecc.02G354600' => 'tca', 'Thecc.04G094400' => 'tca', 'Thecc.04G094500' => 'tca', 'Thecc.08G007400' => 'tca', 'Thecc.08G007500' => 'tca', 'Thecc.08G007600' => 'tca', 'Thecc.08G054200' => 'tca', 'Thhalv10018099m.g' => 'esa', 'Thhalv10018631m.g' => 'esa', 'Thhalv10025232m.g' => 'esa', 'TPR.G26412' => 'tpr', 'TPR.G33281' => 'tpr', 'TPR.G33481' => 'tpr', 'TPR.G3795' => 'tpr', 'TWI36G1755' => 'twi', 'TWI56G0860' => 'twi', 'TWI56G1107' => 'twi', 'TWI56G1381' => 'twi', 'TWI75G1868' => 'twi', 'unitig_0.g2095' => 'ugi', 'unitig_26.g10315' => 'ugi', 'unitig_26.g9816' => 'ugi', 'vmacro16327' => 'vma', 'vmacro18781' => 'vma', 'vmacro21522' => 'vma', 'vmacro21841' => 'vma', 'VMungo0251G1110' => 'vmu', 'VMungo0331G0718' => 'vmu', 'VMungo0647G0574' => 'vmu', 'VMungo0647G0575' => 'vmu', 'VMungo0647G0618' => 'vmu', 'VMungo0647G0696' => 'vmu', 'VMungo0647G1429' => 'vmu', 'VMungo1215G1269' => 'vmu', 'VMungo1383G2848' => 'vmu', 'Zm00001eb038060' => 'zma', 'Zm00001eb084540' => 'zma', 'Zm00001eb100790' => 'zma', 'Zm00001eb154950' => 'zma', 'Zm00001eb255870' => 'zma', 'Zm00001eb311720' => 'zma', 'Zm00001eb311730' => 'zma' ) $gf_id = 'HOM05D000983' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000983' ) $data_identifier = 'HOM05D000983' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 5, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 3, 'atr' => (int) 4, 'acertr' => (int) 2, 'cqu' => (int) 14, 'bca' => (int) 9, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 9, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 19, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 21, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 15, 'sas' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 6, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb311730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1